mvSLOUCH: Multivariate Stochastic Linear Ornstein-Uhlenbeck Models for Phylogenetic Comparative Hypotheses

> library(mvSLOUCH)
Loading required package: ouch
Loading required package: numDeriv
Loading required package: corpcor

バージョン: 1.2.1


関数名 概略
BrownianMotionModel Estimate parameters under a Brownian motion model of evolution
SummarizeBM Summarize parameters estimated under a Brownian motion model
SummarizeMVSLOUCH Summarize parameters estimated under a multivariate OUBM motion model
SummarizeOUCH Summarize parameters estimated under a (multivariate) OU motion model
fitch.mvsl Unordered Fitch parsimony reconstruction of discrete character states
mvSLOUCH-package Multivariate Ornstein-Uhlenbeck type stochastic differential equation models for phylogenetic comparative data.
mvslouchModel Estimate parameters under a (multivariate) OUBM model of evolution
ouchModel Estimate parameters under a (multivariate) OU model of evolution
simulBMProcPhylTree Simulate data on a phylogeny under a (multivariate) Brownian motion model
simulMVSLOUCHProcPhylTree Simulate data on a phylogeny under a (multivariate) OUBM model
simulOUCHProcPhylTree Simulate data on a phylogeny under a (multivariate) OU model

simulBMProcPhylTree

ブラウン運動モデルに基づく系統データをシュミレートする

Arguments

  • phylotree
  • X0
  • sigma
  • dropInternal
  • M.error

simulMVSLOUCHProcPhylTree

simulOUCHProcPhylTree