data-analysis

  • adephylo: exploratory analyses for the phylogenetic comparative method
  • ahp: Analytic Hierarchy Process
  • Amelia: A Program for Missing Data
  • ape: Analyses of Phylogenetics and Evolution
  • arules: Mining Association Rules and Frequent Itemsets
  • AUC: Threshold independent performance measures for probabilistic classifiers.
  • bdvis: Biodiversity Data Visualizations
  • BiodiversityR: Package for Community Ecology and Suitability Analysis
  • BioFTF: Biodiversity Assessment Using Functional Tools
  • bootstrap: Functions for the Book "An Introduction to the Bootstrap"
  • BreakoutDetection: Breakout Detection via Robust E-Statistics
  • caper: Comparative Analyses of Phylogenetics and Evolution in R
  • capm: Companion Animal Population Management
  • celestial: Collection of Common Astronomical Conversion Routines and Functions
  • clifro: Easily Download and Visualise Climate Data from CliFlo
  • cluster: "Finding Groups in Data": Cluster Analysis Extended Rousseeuw et al.
  • coda: Output Analysis and Diagnostics for MCMC
  • coefplot: Plots Coefficients from Fitted Models
  • coenocliner: Coenocline Simulation
  • comclim: Community climate statistics
  • data.tree: General Purpose Hierarchical Data Structure
  • DDD: Diversity-Dependent Diversification
  • dismo: Species Distribution Modeling
  • diversitree: comparative phylogenetic analyses of diversification
  • `DiversityOccupancy: R Interface to Global Biotic Interactions
  • dbscan: Density Based Clustering of Applications with Noise (DBSCAN) and Related Algorithms
  • `DMwR: Functions and data for "Data Mining with R"
  • downscale: Downscaling Species Occupancy
  • e1071: Misc Functions of the Department of Statistics, Probability Theory Group (Formerly: E1071), TU Wien
  • easyRFM: An easy way to RFM analysis by R
  • Evomorph: Evolutionary Morphometric Simulation
  • extremevalues: Detect outliers in one-dimensional data.
  • FD: Measuring functional diversity (FD) from multiple traits, and other tools for functional ecology
  • ForImp: Imputation of Missing Values Through a Forward Imputation Algorithm
  • geiger: Analysis of evolutionary diversification
  • geomorph: Geometric Morphometric Analyses of 2D/3D Landmark Data
  • grofit: The package was developed to fit fit many growth curves obtained under different conditions.
  • gstat: Spatial and Spatio-Temporal Geostatistical Modelling, Prediction and Simulation
  • imputePSF: Enhanced Tipping Point Displays the Results of Sensitivity Analyses for Missing Data
  • imputeTestbench: Test Bench for Missing Data Imputing Models/Methods Comparison
  • inpdfr: Analyse Text Documents Using Ecological Tools
  • jiebaR: Chinese Text Segmentation
  • labdsv: Ordination and Multivariate Analysis for Ecology
  • lda: Collapsed Gibbs Sampling Methods for Topic Models
  • lmodel2: Model II Regression
  • ltm: Latent Trait Models under IRT
  • MCMCglmm: MCMC Generalised Linear Mixed Models
  • MESS: Miscellaneous Esoteric Statistical Scripts
  • mice: Multivariate Imputation by Chained Equations
  • move: Visualizing and Analyzing Animal Track Data
  • mvoutlier: Multivariate outlier detection based on robust methods
  • mvSLOUCH: Multivariate Stochastic Linear Ornstein-Uhlenbeck Models for Phylogenetic Comparative Hypotheses
  • nadiv: (Non)Additive Genetic Relatedness Matrices
  • netdiffuseR: Network Analysis for Diffusion of Innovations
  • nlme: Linear and Nonlinear Mixed Effects Models
  • openair: Tools for the Analysis of Air Pollution Data
  • ouch: Ornstein-Uhlenbeck Models for Phylogenetic Comparative Hypotheses
  • paleotree: Paleontological and Phylogenetic Analyses of Evolution
  • pedigreemm: Pedigree-based mixed-effects models
  • phangorn: Phylogenetic Analysis in R
  • phenology: Tools to Manage a Parametric Function that Describes Phenology
  • phylobase: Base package for phylogenetic structures and comparative data
  • phytools: Phylogenetic Tools for Comparative Biology (and Other Things)
  • picante: R tools for integrating phylogenies and ecology
  • plant: A package for modelling forest trait ecology and evolution
  • popbio: Construction and analysis of matrix population models
  • pscl: Political Science Computational Laboratory, Stanford University
  • proxy: Distance and Similarity Measures
  • psych: Procedures for Psychological, Psychometric, and Personality Research
  • rangeBuilder: Occurrence Filtering and Generation of Species Range Polygons
  • RGA: A Google Analytics API Client
  • rgbif: Interface to the Global 'Biodiversity' Information Facility 'API'
  • rms: Regression Modeling Strategies
  • RNetLogo: Provides an Interface to the Agent-Based Modelling Platform NetLogo
  • Rphylopars: Phylogenetic Comparative Tools for Missing Data and Within-Species Variation
  • rWBclimate: A package for accessing World Bank climate data
  • scoring: Proper scoring rules
  • segmented: Regression Models with Breakpoints/Changepoints Estimation
  • sentimentr: Calculate Text Polarity Sentiment
  • sna: Tools for Social Network Analysis
  • spacodiR: Spatial and Phylogenetic Analysis of Community Diversity
  • spdep: Spatial Dependence: Weighting Schemes, Statistics and Models
  • spider: Species Identity and Evolution in R
  • spocc: Interface to Species Occurrence Data Sources
  • spoccutils: Utilities for Use with 'spocc'
  • survey: Analysis of Complex Survey Samples
  • survival: Survival Analysis
  • srvyr: RDF Library Bindings in R
  • textmineR: Functions for Text Mining and Topic Modeling
  • tidyquant: Tidy Quantitative Financial Analysis
  • TippingPoint: Enhanced Tipping Point Displays the Results of Sensitivity Analyses for Missing Data
  • tm: Text Mining Package
  • topicmodels: Topic Models
  • treeplyr: 'dplyr' Functionality for Matched Tree and Data Objects
  • TR8: A Tool for Downloading Functional Traits Data for Plant Species
  • tsoutliers: Detection of Outliers in Time Series
  • unmarked: Models for Data from Unmarked Animals
  • vegan: Community Ecology Package
  • vegdata: Access Vegetation Databases and Treat Taxonomy
  • VIM: Visualization and Imputation of Missing Values
  • xgboost: Extreme Gradient Boosting
  • zoon: Reproducible, Accessible & Shareable Species Distribution Modelling