data-analysis

• adephylo: exploratory analyses for the phylogenetic comparative method
• ahp: Analytic Hierarchy Process
• Amelia: A Program for Missing Data
• ape: Analyses of Phylogenetics and Evolution
• arules: Mining Association Rules and Frequent Itemsets
• AUC: Threshold independent performance measures for probabilistic classifiers.
• bdvis: Biodiversity Data Visualizations
• BiodiversityR: Package for Community Ecology and Suitability Analysis
• BioFTF: Biodiversity Assessment Using Functional Tools
• bootstrap: Functions for the Book "An Introduction to the Bootstrap"
• BreakoutDetection: Breakout Detection via Robust E-Statistics
• caper: Comparative Analyses of Phylogenetics and Evolution in R
• capm: Companion Animal Population Management
• celestial: Collection of Common Astronomical Conversion Routines and Functions
• clifro: Easily Download and Visualise Climate Data from CliFlo
• cluster: "Finding Groups in Data": Cluster Analysis Extended Rousseeuw et al.
• coda: Output Analysis and Diagnostics for MCMC
• coefplot: Plots Coefficients from Fitted Models
• coenocliner: Coenocline Simulation
• comclim: Community climate statistics
• data.tree: General Purpose Hierarchical Data Structure
• DDD: Diversity-Dependent Diversification
• dismo: Species Distribution Modeling
• diversitree: comparative phylogenetic analyses of diversification
• `DiversityOccupancy: R Interface to Global Biotic Interactions
• dbscan: Density Based Clustering of Applications with Noise (DBSCAN) and Related Algorithms
• `DMwR: Functions and data for "Data Mining with R"
• downscale: Downscaling Species Occupancy
• e1071: Misc Functions of the Department of Statistics, Probability Theory Group (Formerly: E1071), TU Wien
• easyRFM: An easy way to RFM analysis by R
• Evomorph: Evolutionary Morphometric Simulation
• extremevalues: Detect outliers in one-dimensional data.
• FD: Measuring functional diversity (FD) from multiple traits, and other tools for functional ecology
• ForImp: Imputation of Missing Values Through a Forward Imputation Algorithm
• geiger: Analysis of evolutionary diversification
• geomorph: Geometric Morphometric Analyses of 2D/3D Landmark Data
• grofit: The package was developed to fit fit many growth curves obtained under different conditions.
• gstat: Spatial and Spatio-Temporal Geostatistical Modelling, Prediction and Simulation
• imputePSF: Enhanced Tipping Point Displays the Results of Sensitivity Analyses for Missing Data
• imputeTestbench: Test Bench for Missing Data Imputing Models/Methods Comparison
• inpdfr: Analyse Text Documents Using Ecological Tools
• jiebaR: Chinese Text Segmentation
• labdsv: Ordination and Multivariate Analysis for Ecology
• lda: Collapsed Gibbs Sampling Methods for Topic Models
• lmodel2: Model II Regression
• ltm: Latent Trait Models under IRT
• MCMCglmm: MCMC Generalised Linear Mixed Models
• MESS: Miscellaneous Esoteric Statistical Scripts
• mice: Multivariate Imputation by Chained Equations
• move: Visualizing and Analyzing Animal Track Data
• mvoutlier: Multivariate outlier detection based on robust methods
• mvSLOUCH: Multivariate Stochastic Linear Ornstein-Uhlenbeck Models for Phylogenetic Comparative Hypotheses
• nadiv: (Non)Additive Genetic Relatedness Matrices
• netdiffuseR: Network Analysis for Diffusion of Innovations
• nlme: Linear and Nonlinear Mixed Effects Models
• openair: Tools for the Analysis of Air Pollution Data
• ouch: Ornstein-Uhlenbeck Models for Phylogenetic Comparative Hypotheses
• paleotree: Paleontological and Phylogenetic Analyses of Evolution
• pedigreemm: Pedigree-based mixed-effects models
• phangorn: Phylogenetic Analysis in R
• phenology: Tools to Manage a Parametric Function that Describes Phenology
• phylobase: Base package for phylogenetic structures and comparative data
• phytools: Phylogenetic Tools for Comparative Biology (and Other Things)
• picante: R tools for integrating phylogenies and ecology
• plant: A package for modelling forest trait ecology and evolution
• popbio: Construction and analysis of matrix population models
• pscl: Political Science Computational Laboratory, Stanford University
• proxy: Distance and Similarity Measures
• psych: Procedures for Psychological, Psychometric, and Personality Research
• rangeBuilder: Occurrence Filtering and Generation of Species Range Polygons
• RGA: A Google Analytics API Client
• rgbif: Interface to the Global 'Biodiversity' Information Facility 'API'
• rms: Regression Modeling Strategies
• RNetLogo: Provides an Interface to the Agent-Based Modelling Platform NetLogo
• Rphylopars: Phylogenetic Comparative Tools for Missing Data and Within-Species Variation
• rWBclimate: A package for accessing World Bank climate data
• scoring: Proper scoring rules
• segmented: Regression Models with Breakpoints/Changepoints Estimation
• sentimentr: Calculate Text Polarity Sentiment
• sna: Tools for Social Network Analysis
• spacodiR: Spatial and Phylogenetic Analysis of Community Diversity
• spdep: Spatial Dependence: Weighting Schemes, Statistics and Models
• spider: Species Identity and Evolution in R
• spocc: Interface to Species Occurrence Data Sources
• spoccutils: Utilities for Use with 'spocc'
• survey: Analysis of Complex Survey Samples
• survival: Survival Analysis
• srvyr: RDF Library Bindings in R
• textmineR: Functions for Text Mining and Topic Modeling
• tidyquant: Tidy Quantitative Financial Analysis
• TippingPoint: Enhanced Tipping Point Displays the Results of Sensitivity Analyses for Missing Data
• tm: Text Mining Package
• topicmodels: Topic Models
• treeplyr: 'dplyr' Functionality for Matched Tree and Data Objects
• TR8: A Tool for Downloading Functional Traits Data for Plant Species
• tsoutliers: Detection of Outliers in Time Series
• unmarked: Models for Data from Unmarked Animals
• vegan: Community Ecology Package
• vegdata: Access Vegetation Databases and Treat Taxonomy
• VIM: Visualization and Imputation of Missing Values
• xgboost: Extreme Gradient Boosting
• zoon: Reproducible, Accessible & Shareable Species Distribution Modelling