geomorph: Geometric Morphometric Analyses of 2D/3D Landmark Data

> library(geomorph)

Loading required package: rgl

バージョン: 2.1.5

関数名 概略
advanced.procD.lm Procrustes ANOVA and pairwise tests for shape data, using complex linear models
arrayspecs Convert landmark data matrix into array (p x k x n)
bilat.symmetry Analysis of bilateral symmetry
buildtemplate Build 3D surface template
compare.evol.rates Comparing rates of shape evolution on phylogenies
compare.modular.partitions Compare modular signal to alternative landmark subsets
define.links Define links between landmarks
define.modules Define modules (landmark partitions)
define.sliders Select points to "slide" along curves.
define.sliders.2d Deprecated functions in geomorph
define.sliders.3d Deprecated functions in geomorph
digit.curves Calculate semilandmarks along a curve
digit.fixed Digitize 3D landmarks
digitize2d Digitize 2D landmarks.
digitsurface Digitize 3D fixed landmarks and surface semilandmarks.
editTemplate Edit 3D template
estimate.missing Estimate locations of missing landmarks
findMeanSpec Identify specimen closest to the mean of a set of aligned specimens
fixed.angle Rotate a subset of 2D landmarks to common articulation angle
geomorph-package Geometric morphometric analyses for 2D/3D data
gpagen Generalized Procrustes analysis of points, curves, and surfaces
gridPar Set up parameters for grids, points, and links in plotRefToTarget
hummingbirds Landmark data from hummingbird bills (includes sliding semilandmarks on curves)
morphol.disparity Morphological disparity for one or more groups of specimens
morphol.integr Quantify morphological integration between two modules
mosquito landmarks on mosquito wings
motionpaths Simulated motion paths
mshape Estimate mean shape for a set of aligned specimens
pairwise.slope.test Deprecated functions in geomorph
pairwiseD.test Deprecated functions in geomorph
phylo.pls Quantify phylogenetic morphological integration between two sets of variables
physignal Assessing phylogenetic signal in morphometric data
plethShapeFood Head shape and food use data from Plethodon salamanders
plethodon Landmark data from Plethodon salamander heads
plethspecies Average head shape and phylogenetic relationships for several Plethodon salamander species
plotAllSpecimens Plot landmark coordinates for all specimens
plotAllometry Plot allometric patterns in landmark data
plotGMPhyloMorphoSpace Plot phylogenetic tree and specimens in tangent space
plotOutliers Find potential outliers
plotRefToTarget Plot shape differences between a reference and target specimen
plotTangentSpace Plot specimens in tangent space
plotspec Plot 3D specimen, fixed landmarks and surface semilandmarks.
procD.lm Procrustes ANOVA/regression for shape data
procD.pgls Phylogenetic ANOVA/regression for shape data
pupfish landmarks on pupfish
ratland Landmark data from dataset rat
read.morphologika Read landmark data from Morphologika file
read.ply Read mesh data (vertices and faces) from ply files
readland.nts Read landmark data matrix from nts file
readland.tps Read landmark data from tps file
readmulti.nts Read landmark data from multiple nts files
scallopPLY 3D scan of a scallop shell from a .ply file in mesh3d format
scallops Landmark data from scallop shells
trajectory.analysis Quantify and compare shape change trajectories
two.b.pls Two-block partial least squares analysis for shape data
two.d.array Convert (p x k x n) data array into 2D data matrix
warpRefMesh Creates a mesh3d object warped to the mean shape.
warpRefOutline Creates a 2D outline warped to the mean shape.
writeland.tps Write landmark data to tps file

gpagen

physignal