unmarked: Models for Data from Unmarked Animals

> library(unmarked)
Loading required package: reshape
Loading required package: lattice
Loading required package: Rcpp

バージョン: 0.11.0

関数名 概略
SE-methods Methods for Function SE in Package 'unmarked'
SSE Compute Sum of Squared Residuals for a Model Fit.
Switzerland Swiss landscape data
[-methods Methods for bracket extraction [ in Package 'unmarked'
`backTransform-methods Methods for Function backTransform in Package 'unmarked'
birds BBS Point Count and Occurrence Data from 2 Bird Species
coef-methods Methods for Function coef in Package 'unmarked'
colext Fit the dynamic occupancy model of MacKenzie et. al (2003)
computeMPLElambda Compute the penalty weight for the MPLE penalized likelihood method
confint-methods Methods for Function confint in Package 'unmarked'
crossbill Detection/non-detection data on the European crossbill (Loxia curvirostra)
cruz Landscape data for Santa Cruz Island
csvToUMF Convert .CSV File to an unmarkedFrame
detFuns Distance-sampling detection functions and associated density functions
distsamp Fit the hierarchical distance sampling model of Royle et al. (2004)
fitList constructor of unmarkedFitList objects
fitted-methods Methods for Function fitted in Package 'unmarked'
formatDistData Bin distance data
formatMult Create unmarkedMultFrame from Long Format Data Frame
formatWide Convert between wide and long data formats.
frogs 2001 Delaware North American Amphibian Monitoring Program Data
gdistsamp Fit the generalized distance sampling model of Chandler et al. (2011).
getB-methods Methods for Function getB in Package 'unmarked'
getFP-methods Methods for Function getFP in Package 'unmarked'
getP-methods Methods for Function getP in Package 'unmarked'
gf Green frog count index data
gmultmix Generalized multinomial N-mixture model
gpcount Generalized binomial N-mixture model for repeated count data
imputeMissing A function to impute missing entries in continuous obsCovs
issj Distance-sampling data for the Island Scrub Jay (Aphelocoma insularis)
jay MHB European Jay data set
lambda2psi Convert Poisson mean (lambda) to probability of occurrence (psi).
linearComb-methods Methods for Function linearComb in Package 'unmarked'
linetran Simulated line transect data
mallard Mallard count data
masspcru Massachusetts North American Amphibian Monitoring Program Data
modSel Model selection results from an unmarkedFitList
multinomPois Multinomial-Poisson Mixtures Model
nonparboot-methods Nonparametric bootstrapping in unmarked
occu Fit the MacKenzie et al. (2002) Occupancy Model
occuFP Fit occupancy models when false positive detections occur (e.g., Royle and Link [2006] and Miller et al. [2011])
occuPEN Fit the MacKenzie et al. (2002) Occupancy Model with the penalized likelihood methods of Hutchinson et al. (2015)
occuPEN_CV Fit the MacKenzie et al. (2002) Occupancy Model with the penalized likelihood methods of Hutchinson et al. (2015) using cross-validation
occuRN Fit the occupancy model of Royle and Nichols (2003)
ovendata Removal data for the Ovenbird
parboot Parametric bootstrap method for fitted models inheriting class.
pcount Fit the N-mixture model of Royle (2004)
pcountOpen Fit the open N-mixture models of Dail and Madsen and extensions
piFuns Compute multinomial cell probabilities
pointtran Simulated point-transect data
predict-methods Methods for Function predict in Package 'unmarked'
ranef-methods Methods for Function 'ranef' in Package 'unmarked'
sight2perpdist Convert sight distance and sight angle to perpendicular distance.
simulate-methods Methods for Function simulate in Package 'unmarked'
unmarked-package Models for Data from Unmarked Animals
unmarkedEstimate-class Class "unmarkedEstimate"
unmarkedEstimateList-class Class "unmarkedEstimateList"
unmarkedFit-class Class "unmarkedFit"
unmarkedFitList-class Class "unmarkedFitList"
unmarkedFrame Create an unmarkedFrame, or one of its child classes.
unmarkedFrame-class Class "unmarkedFrame"
unmarkedFrameDS Organize data for the distance sampling model of Royle et al. (2004) fit by distsamp
unmarkedFrameMPois Organize data for the multinomial-Poisson
mixture model of Royle (2004) fit by multinomPois
unmarkedFrameOccu Organize data for the single season occupancy models fit by occu and occuRN
unmarkedFrameOccuFP Organize data for the single season occupancy models fit by occuFP
unmarkedFramePCO Create an object of class unmarkedFramePCO that contains data used by pcountOpen.
unmarkedFramePCount Organize data for the N-mixture model fit by pcount
unmarkedMultFrame Create an unmarkedMultFrame, unmarkedFrameGMM, unmarkedFrameGDS, or unmarkedFrameGPC object
unmarkedRanef-class Class '"unmarkedRanef"'
vcov-methods Methods for Function vcov in Package 'unmarked'