popbio: Construction and analysis of matrix population models


> library(popbio)
Loading required package: quadprog

Attaching package: 'popbio'

The following object is masked from 'package:AUC':


バージョン: 2.4

関数名 概略
01.Introduction Introduction to the popbio Package
02.Caswell Converted Matlab functions from Caswell (2001)
03.Morris Converted Matlab functions from Morris and Doak (2002)
Kendall Find the best Kendall's estimates of mean and environmental variance for beta-binomial vital rates.
LTRE Life Table Response Experiment
QPmat Build a projection matrix from a time series of individuals (or densities) per stage.
aq.census Annual census data for Aquilegia in the southwestern US
aq.matrix Create a projection matrix for Aquilegia
aq.trans Annual transition data for Aquilegia in the southwestern US
betaval Generate beta-distributed random numbers
boot.transitions Bootstrap observed census transitions
calathea Projection matrices for a tropical understory herb
colorguide Plot a simple guide to colors
countCDFxt Count-based extinction probabilities and
bootstrap confidence intervals
damping.ratio Damping ratio
eigen.analysis Eigenvalue and eigenvector analysis of a
projection matrix
elasticity Elasticity analysis of a projection matrix
extCDF Count-based extinction time cumulative distribution function
fundamental.matrix Fundamental matrix and age-specific survival
generation.time Generation time
grizzly Population sizes of grizzly bears in Yellowstone from 1959-1997
head2 Return the first and last part of a matrix or dataframe
hudcorrs Correlation matrices for Hudsonia vital rates
hudmxdef Matrix definition program for Hudsonia vital rates
hudsonia Projection matrices for mountain golden heather
hudvrs Best Kendall estimates of Hudsonia vital rate means and variances
image2 Display a matrix image
lambda Population growth rate
lnorms Generate random lognormal values for fertility rates
logi.hist.plot Plot logistic regression
matplot2 Plot a matrix
matrix2 Square matrices
mean.list Calculate mean matrix
monkeyflower Projection matrices for monkeyflower
multiresultm Incorporate demographic stochasticity into population projections
nematode Population densities for the sugarbeet cyst nematode
net.reproductive.rate Net reproductive rate
pfister.plot Create log-log plots of variance vs. sensitivity and CV vs. elasticity
pop.projection Calculate population growth rates by projection
projection.matrix Construct projection matrix models using transition frequency tables
reproductive.value Stable stage distribution
resample Resample a projection matrix
sensitivity Sensitivity analysis of a projection matrix
splitA Split a projection matrix into separate T and F matrices
stable.stage Stable stage distribution
stage.vector.plot Plot stage vector projections
stoch.growth.rate Calculate log stochastic growth rate
stoch.projection Simulate stochastic growth from a sequence of matrices
stoch.quasi.ext Calculate quasi-extinction threshold
stretchbetaval Generate stretched beta-distributed random numbers
teasel Projection matrix for teasel
test.census Census data for hypothetical plant
tortoise Projection matrices for desert tortoise
var2 Calculate a variance matrix
varEst Estimate the variance of beta-binomial vital rates using approximation method of Akcakaya
vitalsens Vital rate sensitivities and elasticities
vitalsim Calculate stochastic growth rate and extinction
time CDF using vital rates with within-year, auto-, and cross-correlations
whale Projection matrix for killer whale
woodpecker Survirvorship data for adult and juvenile Acorn Woodpeckers